External Email - Use Caution
Hi Anastasia,
Sure, I will try that. Thanks for the advice!
Regards, Heidi
On Fri, Sep 21, 2018 at 4:49 PM Yendiki, Anastasia AYENDIKI@mgh.harvard.edu wrote:
You need to specify one more option, like -prep, etc. Please follow the instructions on the tutorial and, if the problem persists, send the exact command line that you ran and the full text of the output that you got.
On Sep 21, 2018 2:42 AM, Heidi Emmanuel Foo heidifoo92@gmail.com wrote:
External Email - Use CautionHi Anastasia,
I think I ran trac-all -c config.txt.
Regards, Heidi
On Thu, Sep 20, 2018 at 10:18 PM Yendiki, Anastasia < AYENDIKI@mgh.harvard.edu> wrote:
What is the trac-all command line that you run?
*From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Heidi Emmanuel Foo < heidifoo92@gmail.com> *Sent:* Wednesday, September 19, 2018 11:06:09 PM *To:* Freesurfer support list *Subject:* Re: [Freesurfer] trac-all using nifti
External Email - Use CautionHi Anastasia,
Nope, I don't actually get any output and/or log file.
Regards, Heidi Foo
On Tue, Sep 18, 2018 at 6:12 PM Yendiki, Anastasia < AYENDIKI@mgh.harvard.edu> wrote:
Hi Heidi - The config file that you sent looked fine to me. What is the trac-all command line that you run, and do you get any other output (like a trac-all.log file)?
Best,
a.y
*From:* freesurfer-bounces@nmr.mgh.harvard.edu < freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Heidi Emmanuel Foo < heidifoo92@gmail.com> *Sent:* Monday, September 17, 2018 11:03:47 PM *To:* Freesurfer support list *Subject:* Re: [Freesurfer] trac-all using nifti
External Email - Use CautionHi Anastasia,
It seems like I do. Could the problem be the config.txt?
Thanks!
Best Regards, Heidi Foo
On Tue, Sep 18, 2018 at 12:47 AM Yendiki, Anastasia < AYENDIKI@mgh.harvard.edu> wrote:
Hi Heidi – Do you have write permission to create the output directory /data_int/heidi/forHeidi/Preprocessed?
a.y
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Heidi Emmanuel Foo heidifoo92@gmail.com Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Monday, September 17, 2018 at 12:55 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] trac-all using nifti
External Email - Use CautionHi Anastasia,
I am currently trying to run trac-all with my DWI data. I do not have the DICOM but only the Nifti files and I would like to use the same bval and bvec template for every subject. I created a configiration file as attached. However, I have the following error message:
: Command not found. : Command not found. set: Variable name must begin with a letter. does not exist.DIR /data_int/heidi/forHeidi/Preprocessed
It would be great if you could advise me on what to do.
Thank you!
Best Regards, Heidi Foo
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The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.