Hi Darren and other Freesurfers
I wrote a tcl script to do just what was described. The one I made gives the flexibility to name the tiff files based on a prefix that you specify before running the script. This way you run the same exact script for as many pictures as you like, simply changing the prefix before running the script.
Here is what you do. In tksurfer, after you have set up whatever overlays and/or labels and/or surfaces etc that you like, you enter at the command prompt set pre <whatever-you-want>
(where the stuff inside the < > is any file prefix... for instance, set pre bold_contrast1 )
then you run the following tcl script via the menu for running a script...
UpdateAndRedraw puts "Taking Snapshots..." make_lateral_view rotate_brain_y 90 redraw set tiff "${pre}_bck.tif" save_tiff $tiff make_lateral_view redraw set tiff "${pre}_lat.tif" save_tiff $tiff rotate_brain_y 180 redraw set tiff "${pre}_med.tif" save_tiff $tiff make_lateral_view rotate_brain_x 90 redraw set tiff "${pre}_inf.tif" save_tiff $tiff rotate_brain_x 180 redraw set tiff "${pre}_sup.tif" save_tiff $tiff make_lateral_view rotate_brain_y 270 redraw set tiff "${pre}_front.tif" save_tiff $tiff
Darren Weber wrote:
Hi Bruce etal,
I would like a short tcl script to rotate each hemisphere through all the main views (lateral, medial, dorsal, ventral, anterior, posterior) and output a graphics file with the name of the subject and the view in the file name. I've found rotate_brain_[xyz] and save_rgb, but the latter does not permit a file name for the output graphics. I would like high-resolution graphics for publications, but the save_rgb outputs about 85-90 dpi images. Is there an option for vector graphics or high resolution tiff or png images?
Best, Darren _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer