Hi-
I've come across a peculiar behavior with recon_checker, and am hoping someone can shed some light on this.
I have used it 100's of times in the past, but not for about 2 months. I recently processed a large set of cases I wanted to QC. When I ran it, some, but not all, of the snaps were corrupted. Specifically the talairach, aseg, surfs, and all the 'detailed snaps', which are basically additional instances of the aforementioned types. The inflated, curv, and parc are all just fine. As the process runs, all images are being displayed in the pop-up windows, and the html page is created.
While there have been no system changes which should affect this, I upgraded from ImageMagick 6.5.4 to 6.8.1 to see if this would fix the problem. The problem remains. And the problem remains w/ or w/o the flag for detailed snaps.
If all of the images were corrupted, I would have certainly concluded something has gone awry with my system. The fact that only some of the images are corrupted makes me scratch my head.
Thoughts? Suggestions?
Thanks, Wil