Run it with --debug as the first option and send me the terminal output doug
On 3/14/14 3:44 AM, Dusan Hirjak wrote:
I did type the same line es mentioned in your Email and I did not put the 1.3 in quotes. However, it is still not working:-( Any other ideas???
Thanks.
DH
Subject: Re: [Freesurfer] Extracting thickness, area and folding
values from Qdec
From: dgwakeman@gmail.com Date: Thu, 13 Mar 2014 18:28:32 -0400 CC: greve@nmr.mgh.harvard.edu; freesurfer@nmr.mgh.harvard.edu To: dusanhirjak@hotmail.com
I think Doug meant the 1.3. Therefore the line should be something like:
mri_glmfit-sim --glmdir mc-z.neg.th13.pdf.dat --cache 1.3 --sim-sign neg
What exactly did you type? (try separating it with lines instead of
quotes)
HTH, D On Mar 13, 2014, at 6:22 PM, Dusan Hirjak wrote:
Dear Doug,
no, I did not put it in quotes. I just typed the mentioned
command, but it is still not working.
I can not find the file comprising the thickness, area or folding
values at peak maxima after Monte Carlo simulation.
Sorry for asking so many questions, but it is still not working. What should I do next?
Best regards,
DH
Date: Thu, 13 Mar 2014 15:15:23 -0400 From: greve@nmr.mgh.harvard.edu To: dusanhirjak@hotmail.com; freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Extracting thickness, area and folding
values from Qdec
are you puttting it in quotes? If so, don't doug
On 03/13/2014 01:46 PM, Dusan Hirjak wrote:
Dear Doug,
I typed 1.3 but it is still not working.
Any other ideas???
Thanks for your help.
DH
Date: Thu, 13 Mar 2014 12:20:57 -0400 From: greve@nmr.mgh.harvard.edu To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Extracting thickness, area and
folding
values from Qdec
Use 1.3 not 1,3
doug On 03/13/2014 10:12 AM, Dusan Hirjak wrote: > Dear Freesurfer Experts, > > I did a correlational analysis in qdec and found several
significant
> clusters after Monte-Carlo simulation (0.05). > Now, I would like to extract the mean cortical thickness,
area and
> folding values (peak maximum) of each study subject above the > significant cluster. > > I tried to run "mri_glmfit-sim --glmdir
mc-z.neg.th13.pdf.dat --cache
> "1,3" --sim-sign neg" > > However, I got the ERROR: thresh = 1.3 not completely
converted
> > What am I doing wrong? Any other ideas? > > Is the pdf.dat file the right one to use??? > > Thanks! > > DH > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
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-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing:
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The information in this e-mail is intended only for the person to
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the e-mail
contains patient information, please contact the Partners
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