Jenifer,
Can you email me the recon-all.log file? From the output below, its not clear to me which binary is core dumpimg.
Does recon-all continue normally?
Nick
On Tue, 2008-08-05 at 11:51 -0500, Juranek, Jenifer wrote:
Hi, Running fsv405 on RHEL4 (64bit) and have encountered the following error after executing recon-all -all: Floating exception (core dumped). Did not encounter this error using fsv401 on the same box. See below for the standard output to screen.
Any ideas?
Many Thanks, Jenifer
[jjuranek@localhost subjects]$ recon-all -all -s PC_011_APO143_2mo INFO: SUBJECTS_DIR is /usr/local/freesurfer/subjects Actual FREESURFER_HOME /usr/local/freesurfer -rwxrwx--- 1 jjuranek root 2271789 Jul 25 07:15 /usr/local/freesurfer/subjects/ PC_011_APO143_2mo/scripts/recon-all.log Linux localhost.localdomain 2.6.9-5.ELsmp #1 SMP Wed Jan 5 19:29:47 EST 2005 x86 _64 x86_64 x86_64 GNU/Linux Floating exception (core dumped) #-------------------------------------------- #@# MotionCor Tue Aug 5 11:38:42 CDT 2008 Found 1 runs /usr/local/freesurfer/subjects/PC_011_APO143_2mo/mri/orig/001.mgz WARNING: only one run found. This is OK, but motion correction cannot be performed on one run, so I'll copy the run to rawavg and continue.
cp /usr/local/freesurfer/subjects/PC_011_APO143_2mo/mri/orig/001.mgz /usr/local /freesurfer/subjects/PC_011_APO143_2mo/mri/rawavg.mgz
/usr/local/freesurfer/subjects/PC_011_APO143_2mo
mri_convert /usr/local/freesurfer/subjects/PC_011_APO143_2mo/mri/rawavg.mgz /us r/local/freesurfer/subjects/PC_011_APO143_2mo/mri/orig.mgz --conform
mri_convert /usr/local/freesurfer/subjects/PC_011_APO143_2mo/mri/rawavg.mgz /usr /local/freesurfer/subjects/PC_011_APO143_2mo/mri/orig.mgz --conform
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