Dear all,
when I run the recon-all -localGI command. I encaunter the same problem as previous described by Meenal (see email below). It seems that the processing stops at the matlab command*make_roi_paths*.
Does anybody encaunter a similar problem and somehow solved it?
Thanks in advance.
Georgiana
Am 04.11.2015 um 17:25 schrieb Dr Meenal Yadav:
Hi List, I am getting the following error when running recon-all lgi for local gyrification index. I have changed the script in matlab as we are using matlab 2013b as mentioned in the previous thread. I am attaching the script. Please let me know what else to do. Thanks Regards Meenal Budhiraja PhD student Karolinska Institute Stockholm,Sweden.
preparing pial mesh structure ... ...searching for mesh edges...done (349.20 sec). ... creating path file for vertex 1 / 66330 area file for outer ROIs saved at 1 Improper assignment with rectangular empty matrix.
Error in dsearchn (line 79) [d(i),t(i)] = min(sum((x-yi).^2,2));
Error in mesh_vertex_nearest (line 29) nearestIndex = dsearchn(vertices,points);
Error in reorganize_verticeslist (line 28) [nextindex,nextvalue]=mesh_vertex_nearest(mesh_total.vertices(remaininglist,:),mesh_total.vertices(verticeslist(start_vertex),:));
Error in make_roi_paths (line 93) reorglist = reorganize_verticeslist (mesh_total, A, mesh_outer, perim, verticeslist, step);
ERROR: make_roi_paths did not complete successfully!
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