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Hi, E
[weishao@gra-login1 01]$ find . -name "talairach.xfm" ./mri/transforms/talairach.xfm
module load freesurfer/7.1.0
export SUBJECTS_DIR=/home/weishao/scratch/BART
segmentHA_T1.sh sub-01
Best, Wei
On Fri, Apr 23, 2021 at 11:35 AM Iglesias Gonzalez, Juan E. < JIGLESIASGONZALEZ@mgh.harvard.edu> wrote:
I’m assuming transforms/talairach.xfm is in there?
Also: what was the exact command you ran?
Cheers,
/E
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://secure-web.cisco.com/1Z77TacJkkAC58QyArzEVJDV_7X8Igro89XsggKNL0YRV39s...
*From: *freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Wei Shao < wshao@research.baycrest.org> *Reply-To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Date: *Friday, April 23, 2021 at 11:05 *To: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject: *[Freesurfer] Hippocampus segmentHA_T1.sh
External Email - Use Caution *Hello, Dear FreeSurfer expert
I tried to use segmentHA_T1.sh for the hippocampus subfields, However, here is the log
cannot find the wmparc.mgz or norm.mgz or talairach.xfm for the subject.
Has the subject been procesed with recon-all?
But the wmparc.mgz and norm.mgz are there
Could you tell me how to fix this? Thanks!
Best,
Wei
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