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If an MRI scan produced many folders with many images in each folder, how do you know which to run the dcmunpack command on? For example:
On Saturday, January 11, 2025 at 03:58:01 PM EST, Fischl, Bruce R.,PHD bfischl@mgh.harvard.edu wrote:
Hi Allison The parameter you give the -i flag is the file name for a single slice in the correct dicom series (the t1-weighted scan). CheersBruce
On Jan 11, 2025, at 3:51 PM, allio34218@aol.com wrote:
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Hi, I'm following the tutorial for dcmunpack, but am getting stuck here: Any ideas on what I'm doing wrong? <1736628593324blob.jpg>
Thanks,Allison O. On Thursday, January 9, 2025 at 08:32:09 AM EST, Douglas N. Greve dgreve@mgh.harvard.edu wrote:
welcome to freesurfer! To convert from dicom to mgz, you can do a couple of things: use mri_convert, eg, mri_convert /path/to/dicomfile mprage.mgz Then run recon-all like recon-all -i mprage.mgz -s subjectname -all You can also use dcmunpack to unpack all volumes from a dicom directory See MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1RoYKZZjxPO0WWjb1cn44ROEIOXlEH-VSRs16jyfwti8a_A... for more info Also check out our tutorials
On 1/8/2025 4:18 PM, allio34218@aol.com wrote:
External Email - Use Caution Hi, I was wondering if anyone can point me to a good tutorial that would focus on how to upload and process DICOM data into FS / FreeView. I have a recent Triage Brain Atrophy report from NeuroQuant and would like to see how this compares to results generated in FS. I am a brand-new user and just installed FS on my computer.
Thank you,Allison O.
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