I would totally give it a try! It runs pretty fast and gives you a segmentation along the way. Cheers, /E
-- Juan Eugenio Iglesias http://www.jeiglesias.com
From: Èlia Pedregosa eliapedregosa@biorem.cat Date: Monday, January 22, 2024 at 8:07 AM To: Iglesias Gonzalez, Juan E. JIGLESIASGONZALEZ@mgh.harvard.edu, freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Cc: Georgina Vidal georginavidal@biorem.cat Subject: Re: EasyReg question
External Email - Use Caution Thanks for your answer. We resolve the problem using another computer.
In our project we perform MRI registration of different subjects to create a template. After that we use a segmentation of the template to get some parts of the brain. However the segmentation result has some problems due to:
1. poor registration that creates a template with artefacts. 2. the registration is fine, but we are not segmenting correctly.
Do you think EasyReg is a good tool to do intersubject registration to segment afterwards?
Thanks for your time. Best regards,
Èlia Pedregosa Sandoval
BIOREM_biomedical engineering
Madrazo 68, bxs.
08006 BARCELONA
Telf. 934 186 129
[cid:2c4df705-8b32-4ee8-8018-7e8bb8586820]http://secure-web.cisco.com/1pZbO1LO9Q9V3_oDMLQtjSe5ntwy9HHTd9meZRlqdEJFKpv6wEpT1nV7lZlCb_Zrifb2WA0LboLMTMTkC5TJ8DVhBlXrVyfKoPRVGxYHHgRwRj8llJALIatENkj4VIvdo9dKN26t1-JDZediUm9BN5gvnTAwhoeSj6dG91nYX7tjfg6Pxgh_j3W99dlcN71tRkB1GnsuDEWSV8GLf-Zmz2qA6TPUP4SpFNDPXIi6rv6h-WX8Hki5L-DScX29lz8B45ouu7SSaZQmRLWtgx0ikor0LkcLlmB-hUZY68MSuteRvO1pnssrsytGzy22f9WVqhG0Jqjq5ZJ6cRvwUSHPuKA/http%3A%2F%2Fwww.biorem.cat%2F[cid:aa04d6f8-7841-41ff-853f-54f95dfc75b9]https://secure-web.cisco.com/16Ddinho0EjOeaAWk5Pvnt9m3mNbWqCyWQksI90cjotBulutMr-QIXpxMsKHcqxnLPLpw_epTWlR9uA1HdjBnObBOpqUELSpUuHEit8L0gel4ZVyWX39JHb5QP1YYqlUMPyml84k3QrYNzKA9iRSU9CJDBib_4SHpDtqPEsqcvQXtgidZnT4IYuio5bbPkQOc0cbpnKsnD-dkdMEKOQZJjwYAqx1KrRsRsi5ai3I87NGmjLVCvxt8mlARtYQg6g69S_Hiwd-O_nENflxt7I_4SwkjJsI4iz904SxvIXsba4rKhTuyTGgTUP917eYZQffr_rEehVfIyb7LHmPJkZ_Atw/https%3A%2F%2Fwww.linkedin.com%2Fcompany%2Fbiorem-biomedical-engineering
________________________________ De: Iglesias Gonzalez, Juan E. JIGLESIASGONZALEZ@mgh.harvard.edu Enviat el: divendres, 19 de gener de 2024 15:49 Per a: Èlia Pedregosa eliapedregosa@biorem.cat Tema: Re: EasyReg question
Thanks for the interest in our work!
It depends on the size of the images, but yeah it’s very memory hungry (a few dozen GBs)
Cheers,
/Eugenio
--
Juan Eugenio Iglesias
From: Èlia Pedregosa eliapedregosa@biorem.cat Date: Friday, January 19, 2024 at 7:47 AM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Cc: Iglesias Gonzalez, Juan E. JIGLESIASGONZALEZ@mgh.harvard.edu Subject: EasyReg question
External Email - Use Caution
Dear Juan Eugenio Iglesias,
We are a biomedical engineering company (BIOREM) in Barcelona, and we are collaborating in a research and innovation project with the University of Barcelona.
For this project we use EasyReg to do brain registrations. However, we have some problems with the necessary memory to run the program. In that sense, we ask you which computational requirements we need.
If it is possible, could you provide us this information?
Thanks,
best regards.
Èlia Pedregosa Sandoval
BIOREM_biomedical engineering
Madrazo 68, bxs.
08006 BARCELONA
Telf. 934 186 129
[cid:2c4df705-8b32-4ee8-8018-7e8bb8586820]http://secure-web.cisco.com/1mKlCVTT8GFIj7hRcUnfvI5dXY9xqjHL4uFc1ixqYh8JELPo-GuptvF_KQEkylunvvkJFYEuK1FzKIYQlanaMbZ5OKJ1aSiTGqlkkgWEmq70SnYseIf6nJE5A5szrTRW3sboQbug4uFXVnTs9V23jMDEcaRHka8NjgH7kUqyv16rIVfQJBw97Ki_FXAKtUbIhIcWiVTAHT4rDD8mF91oc4cieUdk29pyQcyz_cOXgxDmhyBaiqlfqT-9XnCoD7jVXr403qtWIxTzqkCoEKlpemKlPgs6P7hgotWGZPfH1Me8-mf9D4k6CdmAssGP_m9QwEsNticP5kL9I_erZm8Wnew/http%3A%2F%2Fwww.biorem.cat%2F[cid:aa04d6f8-7841-41ff-853f-54f95dfc75b9]https://secure-web.cisco.com/1bzv5HYJB4wHoi0afMXmVtUOkKVAlTyAOUkC6iJ_VsAh7qC4IGunY6nQibuG4bbq8KvFhfh98IIvpeXam0UuZGEdUUO8uFR5k1pY7_0CH-d8f9X87CI9e84l_ZU0H3cl7D3aFiQY85Fc8hTlSYN9pN36hdta-I0vJhsFr7Gd2hPekNkqkzfxGS8PVOb3KpE0FNyEcOrZ7UclG6oYEh1yeIn6P4hnP5vFOZvk0h4AlNdP1uC5uNesMH15d9t_2uIAJ_kUthGcxEsRKieVdfho1vtmnzux0Yr5wHVMwx5Al6wNarArVNPyCuJvfpNgJVdpJ-1FGR4npEqjmY4S9tpq-Dg/https%3A%2F%2Fwww.linkedin.com%2Fcompany%2Fbiorem-biomedical-engineering
Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
