[Freesurfer] ICV and adjusting watershed

Dear Freesurfer users,

We were suprised to find out in two cases that after adjusting watershed (because of skull that was left) and autorecon2 and autorecon3, the ICV was exactly the same as the ICV measured by pipeline--> autorecon-all. If we didn't adjust watershed in one case the skull was included in the pial.

Did we had to rerun autorecon 1 after adjusting watershed to get the skull out of the ICV measure?

thx, Liesbeth Hoekstra

Het UMC St Radboud staat geregistreerd bij de Kamer van Koophandel in het handelsregister onder nummer 41055629. The Radboud University Nijmegen Medical Centre is listed in the Commercial Register of the Chamber of Commerce under file number 41055629.