Hi guys,
On machine inv (more or less the same error on machine ai) nmr-dev-env (same error on nmr-std-env)
cd /space/cuzco/2/users/raij/avml_fmri_mctogether/
setenv SUBJECTS_DIR /space/cognito/5/users/raij/subjects_mri/ setenv SUBJECT fsaverage
tksurfer fsaverage lh inflated -overlay avml07_session_BRISI08/bold/group_ISIXTR_BERT_ERFIRsm5pf5tpefsub_18cat/sphsm10/h-lh.bhdr -timecourse avml07_session_BRISI08/bold/group_ISIXTR_BERT_ERFIRsm5pf5tpefsub_18cat/sphsm10/h-lh.bhdr
Output:
surfer: current subjects dir: /space/cognito/5/users/raij/subjects_mri/ surfer: not in "scripts" dir ==> using cwd for session root surfer: session root data dir ($session) set to: surfer: /autofs/space/cuzco_002/users/raij/avml_fmri_mctogether surfer: Reading header info from /space/cognito/5/users/raij/subjects_mri//fsaverage/mri/T1.mgz reading group avg surface area 822 cm^2 from file surfer: vertices=163842, faces=327680 INFO: bvolumeRead: min = 0, max = 0 *** glibc detected *** corrupted double-linked list: 0x00000000060b7db0 *** Abort
Oddly enough, on machine ai, if I leave out the -timecourse part of the command line, the FreeSurfer window opens with the correct overlay and I can scroll through conditions and time points. Further, if I then manually load the timecourse from File/Load Time Course... menu, this works giving the time course display just as it should
Even more oddly, on machine inv (which is spanking new and has lots of RAM etc) even the above basic command line with only loading the overlay gives the above glibc error.
I have 8 subjects * 66 labels = timecourses of 528 labels to extract, which makes this clearly a script job - the only practical solution would be to find a way to make the command line work.
Suggestions? For example, could it be that this has something to do with nvidia drivers?
Thanks,
Tommi
--- Tommi Raij, M.D., Ph.D. MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging Bldg 149, 13th St Charlestown, MA 02129 U.S.A.