you can try something like mri_convert aseg.mgz --out_orientation PIL aseg.sag.nii.gz
On 11/18/2022 4:31 PM, Haiyun Chen wrote:
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Hello Freesurfer Experts, How can we set the original orientation of an image file such that when the image is opened in a different application the original orientation is a sagittal viewport?
For the file aseg.mgz in the below directory based on your tutorial, could you please tell a specific command to convert aseg.mgz to a file with sagittal viewport as the original orientation? tutorial_data_20190918_1558/practice_with_data/Subj001/mri/aseg.mgz
Thank you in advance!
Best regards Haiyun
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