Perfect! Thanks so much Douglas! Any idea how long that will take?
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve Sent: Thursday, March 02, 2017 11:20 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Question on saving interim files when generating an fsavearge
Just run it with -qcache only and it will only do qcache
On 03/01/2017 02:48 PM, West, John D. wrote:
Hi Douglas.
Thanks for the reply. Forgive me for not responding quickly.
It turns out what we really want is the interim files that are saved during recon-all if you add the -qcache option. Is there any way to generate those files after running recon-all without having to run recon-all again in its entirety? We would also be ok with running the sub command manually if we could know what the command line would be.
Thanks so much. -John
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve Sent: Wednesday, February 15, 2017 5:28 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Question on saving interim files when generating an fsavearge
There is not a flag to do this, but you could edit the scripts so that it does not delete the tmpdir.
On 02/14/2017 09:43 AM, West, John D. wrote:
Hello.
We are looking to save the interim subject files generated when creating an fsaverage. These seem to be automatically deleted at the end of the process so we were wondering if there is a flag or script that would save these for us?
Thanks for your help.
*John D. West, M.S.*
Principal Systems Analyst | Center for Neuroimaging
Indiana University School of Medicine
**
355 West 16^th Street | GH 4100
Indianapolis, IN 46202
317-963-7510
jdwest@iupui.edu mailto:jdwest@iupui.edu
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