Re: [Freesurfer] Expanding pial outline

can you send a snapshot of what you mean? Make sure that it's not the skull stripping removing things (look at the brainmask.mgz volume) On Tue, 18 Jul 2006, Jake Freimer wrote:

I ran two brains through autorecon2 and the pial line is drawn too close at many parts and cuts off parts of the brain. I looked through the website and only saw instructions for how to remove stuff and make the pial line smaller. I was wondering if there is a command I can run to expand the pial line or what is the best way to edit the files so more brain is included. I was looking at the threshold tools and couldn't see a way to convert say anything with a value of 30-40 to 60, so I was wondering if that was also possible. Thanks