Hi, I've been getting the following error message when running autorecon2-wm with some of my images.Any idea as to what might be causing this? Thanks, Alex
Fill Fri Jan 6 14:15:18 EST 2006 Using transforms/talairach.lta mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.mgz wm.mgz filled.mgz /data/flanders/work/alex/freesurfer/subjects_fe/1000795_fixwm/mri logging cutting plane coordinates to ../scripts/ponscc.cut.log... INFO: Using transforms/talairach.lta and its offset for Talairach volume ... using segmentation aseg.mgz... reading input volume...done. searching for cutting planes...voxel to talairach voxel transform 1.120 0.025 -0.148 4.472; 0.007 1.256 0.182 -50.337; 0.160 -0.148 1.109 -29.027; 0.000 0.000 0.000 1.000; voxel to talairach voxel transform 1.120 0.025 -0.148 4.472; 0.007 1.256 0.182 -50.337; 0.160 -0.148 1.109 -29.027; 0.000 0.000 0.000 1.000; mri_fill: could not find any points where lh and rh wm are nbrs INFO: Modifying dst c_(r,a,s), using the transform dst INFO: Modifying dst c_(r,a,s), using the transform dst reading segmented volume aseg.mgz... INFO: Modifying dst c_(r,a,s), using the transform dst ERROR: mri_fill exited with non-zero status Linux flanders 2.4.26 #2 SMP Tue Dec 14 03:07:23 EST 2004 i686 GNU/Linux recon-all exited with errors at Fri Jan 6 14:16:07 EST 2006
Alex Fornito M.Psych/PhD (clin. neuro.) candidate Melbourne Neuropsychiatry Centre and Department of Psychology The University of Melbourne alexander.fornito@wh.org.au