20 Jul
2023
20 Jul
'23
1:20 p.m.
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Do what? If you want to run mri_sclimbic_seg, then just run something like mri_sclimbic_seg --i input-t1.mgz --o sclimbic.mgz
On 6/21/2023 2:13 PM, Ahsan Ali wrote:
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Dear Greve,
How did you do with this line of code? I'm getting a error, would you please explain me with one image?
With Regards Ahsan
Ahsan Ali Ph.D Scholar Department of Applied Mechanics (Biomedical Engineering Group) Indian Institute of Technology Madras Chennai-600036, Tamil Nadu, INDIA Mob.:- +91-8899605552
On Tue, 20 Jun, 2023, 6:58 pm Douglas N. Greve, dgreve@mgh.harvard.edu wrote:
External Email - Use Caution I have not used mri_cc for that. I would use mri_sclimbic_seg; that will also segment the fornix and create a stats files that you can use as normal On 5/26/2023 3:37 AM, Ahsan Ali wrote:External Email - Use Caution Dear Sir/Madam, I hope you are doing well. I'm having a ADNI T1 weighted MRI database. I have run the recon-all command successfully and got a couple of default stats files in the stats folder. Then fornix.mgz is estimated using command "mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto_CCseg.mgz -f folder_name" successfully. Now what can be done to generate the stats for only fornix.mgz? I've been struggling with this for a long time, please help me with this. I'm using linux-ubuntu. 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