Hi Cristian,
Can you send me the original mri_cvs_register command? When I apply the m3z transform to your moving volume the result is not registered to the target.
set morph = combined_toColin27_elreg_aseg.m3z set targ = N27orig.mgz set mov = TS076CDorig.mgz set out = ${mov:r}.2.${targ} mri_vol2vol --mov $mov --targ $targ --o $out --m3z $morph --noDefM3zPath
Lilla
On Thu, 2 Mar 2017, Donos, Cristian wrote:
I have uploaded the files i am using.
After updating to Freesurfer 6.0, i was able to use fullCSVmorph.tm3d, but the coordinates in the output file remain unchanged. The other tm3d files in my csv folder return 10000 10000 10000 for each point in the input txt file.
Best, Cristian _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer