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Dear Eric, Thanks for the interest in our tool! Can you please send us the exact command line that you used, and the full output of mri_easyreg? Cheers, /Eugenio
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From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Eric BARDINET eric.bardinet@upmc.fr Date: Tuesday, August 22, 2023 at 04:57 To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Easyreg > cortical parcels missing after SynthSeg with --parc option ? External Email - Use Caution
Hello Freesurfer Developpers,
I attempted to run mri_easyreg (Freesurfer 7.4) between two MP2RAGE UNI images (acquired on a SIEMENS PRISMA 3T).
First, I did not include segmentations, as I understood that EasyReg would run it for me.
But it didn't. I don't know why.
Then I first ran mri_synthseg with the --parc option on the two images.
I checked the results, and saw cortical labels on both hemispheres.
But when I ran again mri-easyreg adding these images (--ref_seg --flo_reg), I get again the > no cortical parcels.
What did I do wong?
Any hints?
Thanks in advance for your help.
Best,
Eric
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