Paula,
That seems plenty adequate to run recon-all, so four days to process bert seems odd. Are your energy settings set to goto sleep? The adapter setting should be set to 'never' sleep.
Nick
Hi Nick,
These are my system's specifications: Processor 2 x 2,4 GHz 6-Core Intel Xeon Memory 12 GB 1333 MHz DDR3 ECC Software OS X 10.8.2 (12C60)
Paula
Paula Vieweg Aging & Cognition Research Group German Center for Neurodegenerative Diseases (DZNE) Building 15, Room 309a Leipziger Str. 44 39120 Magdeburg GERMANY
phone: +49-391-67-24520 email: paula.vieweg@dzne.de
Am 25.02.13 19:30 schrieb "Nick Schmansky" unter nicks@nmr.mgh.harvard.edu:
Paula,
what is the processor type and speed? how much memory do you have on your system?
Nick
On Mon, 2013-02-25 at 11:50 +0100, Vieweg, Paula /DZNE wrote:
Hi,
I have installed Freesurfer (Leopard version) on Mac Mountain Lion and tried to use it for a full segmentation (recon-all -all). On my own files I get a problem with Talairach, the program aborts and I get the recommendation to try it with -notalcheck. I have done this and Freesurfer has since then taken 6 days to run one brain. I have started the example script with Bert and it has run 4 days. I have aborted all the processes now and am asking for help. All other steps in the Testing protocol with Bert seem to work apart from the recon-all -all. I am using 7T data (but with just 1mm isotropic resolution), which is where I thought the problem came from. Since the example script also does not run (that is, does not finish), it seems to be a problem with the installation and possibly my Mac version. Do you have any suggestion how to solve this?
Best, Paula
Paula Vieweg Aging & Cognition Research Group German Center for Neurodegenerative Diseases (DZNE) Building 15, Room 309a Leipziger Str. 44 39120 Magdeburg GERMANY
phone: +49-391-67-24520 email: paula.vieweg@dzne.de _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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