Re: [Freesurfer] Skull stripping

Hi Alex,

if the strip removes the cerebellum, then the aseg stuff will fail (if you're using it). If you aren't it doesn't really matter.

cheers, Bruce

On Sat, 10 Sep 2005, Fornito, Alexander wrote:

Hi all, Couple of questions re: failures of skull stripping"

• If you edit the brain volume after autorecon1, do you need to re-run autorecon1 again, or van you just continue on to autorecon2?
• Is it a major problem if the strip removes the cerebellum, since it's excluded by the cuttting planes anyway, or does this interfere with finding the cutting planes later on?

Thanks, Alex

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