26 Nov
2018
26 Nov
'18
2:58 p.m.
External Email - Use Caution
Dear freesurfer experts,
I am using freesurfer to analyze some fMRI data collected on two monkeys. My runs have a partial field of view, since just the posterior part of the brain was scanned. Unfortunately, no full-head EPI was collected. The registration between the processed functional data and the T1 is bad. All the values in the register.dof6.mincost file are above 0.8 and also visually I can see some mismatch. I though to run bbregister, could you suggest me which is the best procedure and which steps of the preprocessing I should re-run after?
Thanks
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Francesca Strappini, Ph.D.
Neurobiology Department
Weizmann Institute of Science
234 Herzl Street, Rehovot 7610001 Israel
Tel.: +972 58 444 2584
E-mail: francesca.strappini@weizmann.ac.il