Re: [Freesurfer] mri_watershed Error

Hi Boris

can you check to make sure that the input to the watershed looks ok? Also, in general it is a lot easier for us to help if you send us the full command line and screeen output and attach the recon-all.log

cheers Bruce

On Thu, 11 Oct 2018, Boris Rauchmann wrote:

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When I run recon-all i get the follwing error message:

mri_watershed Error:   GLOBAL region of the brain empty ! Linux 02f92500bcfb 4.15.0-36-generic #39~16.04.1-Ubuntu SMP Tue Sep 25 08:59:23 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux

recon-all -s sub-XYZ exited with ERRORS at Thu Oct 11 15:10:22 UTC 2018

The .nii file looks fine. Can someone help me with this?

Best, Boris