20 Jun
2023
20 Jun
'23
9:36 a.m.
External Email - Use Caution
On 5/28/2023 1:32 PM, Ruifeng Dong wrote:
External Email - Use Caution
Hi all,
I am running freesurfer 7.3.2 for segmentation of T1 data. It seems like still using the old skull stripping tools by default. How should we change it to using synthstrip? (Question 1)
Add -synthstrip
Also, is it a good idea to also turn on the --no-csf flag for cortex and subcortical segmentation? (Question 2)
If using synthstrip, do we still need the -T2 option for better treatment of dura regions? (Question 3)
Thank you.
Best, Ruifeng
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1lhsNy4BOjHHWMklbBmpOHEyEiVnqOmxu5YZuPeMGaSF5Bq...