Hello,
When we tried running the white matter fill procedure on the example data, we kept encountering these error messages. The line 'MRIvoxelToTalairachVoxel: unsupported slice direction -1' seems to be repeated for every voxel in the volume. Can you tell me what this errormessage is about and what's wrong? We tried running the white matter fill from the commandline or with the gui, and get the same result.
Wietske
/usr/local/freesurfer/bin/Linux/mri_fill -lval 255 -rval 80 -ccmask -T 1 -L /arthur/data_local/subjects/blobby/mri/tmp/ponscall.dat /arthur/data_local/subjects/blobby/mri/wm /arthur/data_local/subjects/blobby/mri/filled using 255 as fill val for left hemisphere. using 80 as fill val for right hemisphere. not using corpus callosum to mask possible location of pons. logging cutting plane coordinates to /arthur/data_local/subjects/blobby/mri/tmp/ponscall.dat... reading input volume...done. searching for cutting planes...MRIvoxelToTalairachVoxel: unsupported slice direction -1 MRIvoxelToTalairachVoxel: unsupported slice direction -1 MRIvoxelToTalairachVoxel: unsupported slice direction -1 MRIvoxelToTalairachVoxel: unsupported slice direction -1 MRIvoxelToTalairachVoxel: unsupported slice direction -1 MRIvoxelToTalairachVoxel: unsupported slice direction -1