Hi Seonjoo,
your base command is missing the "-all" so no processing is done in the base, which is why the file is missing later..
Best, Martin
On Wed, 2019-08-07 at 17:27 +0000, Lee, Seonjoo wrote:
External Email - Use CautionDear Freesurfer, Could you help me to resolve this error? I looked up the previous postings, but the recommendation (copying files in the same folder etc.) did not help. Thank you.
$ recon-all -base template -tp 002_S_0295_S32678 -tp 002_S_0295_S567612 -sd $SUBJECTS_DIR Subject Stamp: freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c Current Stamp: freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c INFO: SUBJECTS_DIR is /Users/seonjoolee/ADNI_long/tmp Actual FREESURFER_HOME /Applications/freesurfer Darwin Seonjoos-iMac.nyspi.local 18.5.0 Darwin Kernel Version 18.5.0: Mon Mar 11 20:40:32 PDT 2019; root:xnu-4903.251.3~3/RELEASE_X86_64 x86_64
Started at Wed Aug 7 10:24:55 EDT 2019 Ended at Wed Aug 7 10:24:56 EDT 2019 #@#%# recon-all-run-time-hours 0.000 recon-all -s template finished without error at Wed Aug 7 10:24:56 EDT 2019 done
$ recon-all -long 002_S_0295_S32678 template -all ERROR: file /Users/ll/ADNI_long/tmp/template/base-tps does not exist!
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