Hi Knut, It should run by default. Did you check the summary log file, $SUBJECTS_DIR/QA/recon_checker.ALL.summary.log? Otherwise, could you send the terminal output when you run QAtools on a single subject? -Louis
On Sun, 14 Oct 2012, Knut J Bjuland wrote:
Hi,
I have downloaded the latest QA_tools v1.1 from http://surfer.nmr.mgh.harvard.edu/fswiki/QATools. However, when I ran
recon_checker, I did not get a signal to noise calculations. I ran recon_checker with -s-dir subjectfile and -snaps-detailed. Is there any option that I missed? Is it possible to download a newer version from cvs?
Knut J
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