I'm trying to convert a surface label to a nifti file to use with functional surface data that is already in nifti format. The ultimate goal is to be able to use the converted surface label as a seed in gPPI analyses that is run in MATLAB.
I've been able to use volume based seeds for the MNI305 subcortical stream and carryout the analysis on the surfaces already. I'm just wanting to use cortical surface seeds now.
I think I've got the code correct, but wanted to double check that I am using the correct command:
mri_label2label -srclabel mylabel --s fsaverage --trglabel tmplabel --outmask test.nii --regmethod surface --hemi lh
In this case, does the target surface matter? It seems to default to white?
Best Regards, Donald McLaren ================= D.G. McLaren, Ph.D. Research Fellow, Department of Neurology, Massachusetts General Hospital and Harvard Medical School Postdoctoral Research Fellow, GRECC, Bedford VA Website: http://www.martinos.org/~mclaren Office: (773) 406-2464 ===================== This e-mail contains CONFIDENTIAL INFORMATION which may contain PROTECTED HEALTHCARE INFORMATION and may also be LEGALLY PRIVILEGED and which is intended only for the use of the individual or entity named above. If the reader of the e-mail is not the intended recipient or the employee or agent responsible for delivering it to the intended recipient, you are hereby notified that you are in possession of confidential and privileged information. Any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited and may be unlawful. If you have received this e-mail unintentionally, please immediately notify the sender via telephone at (773) 406-2464 or email.