18 May
2016
18 May
'16
4:39 p.m.
Hello,
I'm having problems with regenerating the surfaces for stroke cases after editing the brainmask.mgz file. In the aseg.mgz file, the brain matter around lesion area is correctly classified as brain matter. In the pial surface, this brain matter is not included.
I've tried to edit the brainmask.mgz file to include this region, but when I run: recon-all -subjid <SUBJECT> -autorecon2-pial, the surfaces generated are not changed at all.
I have attached some images to this email. I'm new to Freesurfer, so any help would be greatly appreciated.
Thank you.
