hi the full error message is reading input surface /XXXXXXXXXX/surf/lh.pial... reading input pial surface /XXXXXXXXXX/surf/lh.pial... reading input white surface //XXXXXXXXX/surf/lh.white... mris_anatomical_stats: could not parse 1697283th line '60529 -5.365 -17' in label file subj: could not read label file (null)
On Mon, Nov 24, 2014 at 4:56 PM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
What is the full terminal output and error msg?
On 11/21/2014 04:14 AM, Anna Jonsson wrote:
hi, I have tried to make prefrotnal cortex label by doing first
mri_annotation2label --subject "$subject" --hemi rh --outdir "$subject"/label
mri_mergelabels -i lh.caudalanteriorcingulate.label -i lh.caudalmiddlefrontal.label -i lh.lateralorbitofrontal.label -i lh.medialorbitofrontal.label -i lh.parsopercularis.label -i lh.parsorbitalis.label -i lh.parstriangularis.label -i lh.rostralanteriorcingulate.label -i lh.rostralmiddlefrontal.label -i lh.superiorfrontal.label -i lh.lateralorbitofrontal.label -o lh.prefrontalcortex.label -d /directory/subject/label
which does create a label called x.prefrontalcortex.label in each persons directory. then however when i try to do
mris_anatomical_stats -l $SUBJECTS_DIR/"$subject"/label/lh.prefrontalcortex.label "$subject" lh pial | grep "thickness" >> left_prefrontal
i get error and say it cant find label. any pointers on what im doing wrong?
thank you
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-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
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