Re: [Freesurfer] -conform option in mri_convert produces crazy artefacts

Hi Antonin

hmmm. Can you try *only* loading the conformed image and seeing how it looks? freeview will use one of the images as the basis for it's display coordinates, which can cause apparent slicing artifacts that are only display issues for other volumes.

cheers Bruce

On Tue, 3 Sep 2019, Rovai Antonin wrote:

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Hello again

I have the following issue when running mri_convert. When using the option -conform option (as in the reconall pipeline), the sag slices seems to be shifted at some point (see attached pictures). What is happening?

By the way the option description is not super clear, could you please give some extra details?

Best

Antonin

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