Hi Peter
can you send us the command line you used and the entire screen output and recon-all.log file? Otherwise it's not possible for us to help you.
cheers Bruce On Sat, 20 Feb 2016, pdavis@westol.com wrote:
Hi,
We would like to process 1.5 T GE dicom scans for over 200 individuals. It is unclear how to import these into FreeSurfer and process in batch.
Each subject folder consists of several subfolders. Each subfolder consists of all the images of a single pulse sequence, e.g. sagittal spgr, axial T2, etc. The images in the subfolders are files labeled I.001.dcm, I.002.dcm, ... .
Each image is a valid dicom image which can be individually opened in other dicom viewing programs. However, the entire series of images in the subfolder is not automatically recognized as a 3D set.
Thank you,
Peter Davis
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