External Email - Use Caution
Hi Freesurfer experts,
I’ve sent few days ago the Topic number 4 below (New PETSurfer Questions). I see from the summary that Topic number 5 contains the reply from Douglas, but I’m unable to visualize any topics after the number 4 (as you can see below).
Would you able to resend the reply (Topic number 5), please?
Sorry for the inconvenience and many thanks,
Best,
Pilar
Il giorno 7 mag 2020, alle ore 10:24 PM, freesurfer-request@nmr.mgh.harvard.edu ha scritto:
Send Freesurfer mailing list submissions to freesurfer@nmr.mgh.harvard.edu
To subscribe or unsubscribe via the World Wide Web, visit https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer or, via email, send a message with subject or body 'help' to freesurfer-request@nmr.mgh.harvard.edu
You can reach the person managing the list at freesurfer-owner@nmr.mgh.harvard.edu
When replying, please edit your Subject line so it is more specific than "Re: Contents of Freesurfer digest..."
Today's Topics:
- Re: HCPMMP1 parcellation to aseg (.mgz) (pooja prabhu)
- Re: HCPMMP1 parcellation to aseg (.mgz) (Douglas N. Greve)
- Re: HCPMMP1 parcellation to aseg (.mgz) (Glasser, Matthew)
- New PETSurfer Questions (Ferraro, Pilar)
- Re: New PETSurfer Questions (Douglas N. Greve)
- Re: HCPMMP1 parcellation to aseg (.mgz) (Douglas N. Greve)
- Re: Get Atlas surfaces in subject space (Douglas N. Greve)
- Compare individual to a group (Xiaojiang Yang)
- Re: Compare individual to a group (Douglas N. Greve)
- Re: Get Atlas surfaces in subject space (Ian Hardingham)
- FW: HCPMMP1 parcellation to aseg (.mgz) (Glasser, Matthew)
- Re: FreeSurfer 7 stable (Mina Rizkallah)
- Re: FreeSurfer 7 stable (Douglas N. Greve)
- Re: freesurfer 7.0.0 in a virtual machine... (fsbuild)
Message: 1 Date: Thu, 7 May 2020 21:47:46 +0530 From: pooja prabhu prabhuppooja@gmail.com Subject: Re: [Freesurfer] HCPMMP1 parcellation to aseg (.mgz) To: freesurfer@nmr.mgh.harvard.edu Message-ID: CANeOyK=NpztkVy3_N1wWPoHQuAFeDJ8rDFSLbf4HrAv-AJuFHA@mail.gmail.com Content-Type: text/plain; charset="utf-8"
External Email - Use CautionHCPMMP1 parcellation is multi modal parcellation We need the file something like we have for 'aparc' parcellation. The file format should be in .mgz (aparc.HCPMMP1+aseg.mgz) How can i do it? (i have lh.HCPMMP1.annot and rh.HCPMMP1.annot)
Date: Thu, May 7, 2020 at 2:16 PM Subject: HCPMMP1 parcellation to aseg (.mgz) To: freesurfer@nmr.mgh.harvard.edu
Hai list,
Can I get some insight on how to convert HCPMMP1 to aseg(provided we have annotation
files) for fsaverage brain?
For example: for aparc parcellation we use aparc2aseg and get
aparc+aseg.mgz.
Similarly I need for HCPMMP1. Can someone help me with this? Thank you
From: "Glasser, Matthew" glasserm@wustl.edu Subject: Re: [Freesurfer] HCPMMP1 parcellation to aseg (.mgz) To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Cc: Timothy Coalson tsc5yc@mst.edu Message-ID: 29142489-F691-4E6E-A069-F7377D9C7A63@wustl.edu Content-Type: text/plain; charset="utf-8"
External Email - Use CautionThat is our multi-modal parcellation. Tim has some instructions to get data from the fs_LR mesh to fsaverage in GIFTI format. Doug perhaps you can say how to convert from GIFTI to annot?
Matt.
-- Thank You Pooja Prabhu