Re: [Freesurfer] white.surf doesn't follow wm.mgz

Thanks Bruce. But what happens when I've already done the manual edit, run autorecon2-wm and still see the defect?

Hi Dahlia, this usually means there was a topological defect that was fixed incorrectly. You'll need to edit the wm.mgz to remove it, then run autorecon2-wm.

cheers, Bruce On Mon, 22 Sep 2008 dahlia@nmr.mgh.harvard.edu wrote:

...

Hi,

What should I do when the white volume looks right (e.g. filled in where needed) but the white surface doesn't follow the boundary of the volume? I've done recon-all with autorecon2-wm and autorecon3.

Thanks! Dahlia. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer