Thanks for your reply Bruce. I used:
export SUBJECTS_DIR=/study/NCCAM/Data/MRI/processed/structural/freesurfer/
make_average_subject --out average --fsgd mnp_ltm_v2.fsgd
On Sun, Feb 12, 2012 at 5:16 PM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:
can you give us the command line you used? And what the SUBJECTS env variable was (if you used it)?
On Sun, 12 Feb 2012, Martina Ly wrote:
Dear freesurfers, I am coming across an error in the beginning of
make_average_volume of make_average_subject where mri_convert fails. make_average_surface finished without a problem so hopefully that part will not need to be re-run. I've check permissions, cpu space, paths but couldn't find anything... Any help/suggestions would greatly appreciated. Below is the error message:
INFO: Applying transformation from file/study/NCCAM/Data/MRI/** processed/structural/**freesurfer//WB101_1//mri/**transfo rms/talairach.xfm... ------------------------------**--- INFO: Transform Matrix (linear_ras_to_ras) 1.156 0.062 0.028 -2.110; -0.102 1.113 0.318 -31.524; -0.029 -0.322 1.218 4.598; 0.000 0.000 0.000 1.000; INFO: Transform dst volume info is not used (valid flag = 0). INFO: assumes that the dst volume given is the same as the dst for the transform mghWrite(/study/NCCAM/Data/**MRI/processed/structural/** freesurfer//average/tmp /make_average_vol-tmp-2117/**orig-WB101_1/.mgh, -1): could not open file ------------------------------**--- Applying LTAtransformInterp (resample_type 1) writing to/study/NCCAM/Data/MRI/**processed/structural/** freesurfer//average/tmp/make_**ave rage_vol-tmp-2117/orig-WB101_**1/.mgh... ERROR: failure writing/study/NCCAM/Data/MRI/**processed/structural/** freesurfer//average/tmp/make_**ave rage_vol-tmp-2117/orig-WB101_**1/.mgh /study2/NCCAM/Data/MRI/**processed/structural/**freesurfer ERROR: mri_convert failed.
Many thanks in advance, Martina
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