Re: [Freesurfer] Regarding: oblique view

sure. Have you tried running it through recon-all? It may work fine.... On Tue, 22 Mar 2016, Dr Sampada Sinha wrote:

Thanks Bruce for your reply. The acquisition was oblique and the voxel size doesn't conform to the 1mm cube isotropic. I am trying to work on it and figure out a solution. However, if I am not, hope its okay to send you the nifti image. Thanks and regards,

Sampada

Rnday, March 20, 2016, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: what do you mean by "adding" an oblique angle? If you mean acquiring the data obliquely you should be fine as long as the voxels are close to 1mm isotropic.

  cheers
  Bruce
  On Sun, 20 Mar 2016, Dr Sampada Sinha wrote:

  > Dear freesurfer experts,
  > Does adding an oblique angle during coronal or axial acquisitions of
  T1w
  > images lead to topographical errors during mri_fix_topology process?
  >
  > Thanks and regards,
  >
  > Sampada
  >
  >
  >
  > --
  > Sampada Sinha
  >
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