Re: [Freesurfer] Autorecon re-processing

does your version not tell you these things when you run -help?

Fornito, Alexander wrote:

HI, Just wanted to check a few things re: re-running autorecon. I'm guessing that re-running autorecon with the -pial flag re-runs make_final_surfaces, which takes about 4-6 hours (correct?). What is re-run when the -wm and -cp flags are used, and how long do they take?

...

From what I understand, -cp would require re-running everything from intensity normalization on, including the subcortical segmentation, while -wm would require re-running the topology fixer and final surfaces.

Does this sound about right? Thanks, Alex

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