Dear experts,
I was able to coax out a little bit more information on the nature of the error that I am encountering in func2roi-sess.
Looking at the last line of the log (final 25 or so lines of the log are pasted below), it seems that the program is looking for bold/007/fmcsm8, but actually sees bold/007/ fmcsm8
Is it plausible that there is an errant space entered somewhere in the code that is causing the problem? I have looked through the source code and nothing is jumping out at me as obviously causing the error.
/mnt/users.q.shares/jar62.GDfLZ35tI9j9pkcF2UKe/Analysis/freesurfer/SAD_C22 mri_vol2roi --srcvol bold/007 /fmcsm8 --roiavg bold/dotprobe_all_hrf/lh_lingual/fmcsm8-007 --srcreg bold/register.dat --label /mnt/users.q.shares/jar62.GDfLZ35tI9j9pkcF2UKe/Analysis/freesurfer/SAD_C22/l abel/lh.lingual.label --mskvol bold/dotprobe_all_hrf//AllvFix/sig --msksamesrc --mskthresh 0 --msktail pos --mskframe 0 --finalmskvol bold/dotprobe_all_hrf/lh_lingual/mask --roiavgtxt bold/dotprobe_all_hrf/lh_lingual/fmcsm8-007 .txt ------------------------------------------- -------------------------------------------------------- /mnt/users.q.shares/jar62.GDfLZ35tI9j9pkcF2UKe/Analysis/freesurfer/SAD_C22 mri_vol2roi --srcvol bold/007 /fmcsm8 --roiavg bold/dotprobe_all_hrf/lh_lingual/fmcsm8-007 --srcreg bold/register.dat --label /mnt/users.q.shares/jar62.GDfLZ35tI9j9pkcF2UKe/Analysis/freesurfer/SAD_C22/l abel/lh.lingual.label --mskvol bold/dotprobe_all_hrf//AllvFix/sig --msksamesrc --mskthresh 0 --msktail pos --mskframe 0 --finalmskvol bold/dotprobe_all_hrf/lh_lingual/mask --roiavgtxt bold/dotprobe_all_hrf/lh_lingual/fmcsm8-007 .txt version $Id: mri_vol2roi.c,v 1.26.2.2 2008/04/02 22:28:56 greve Exp $ -------------------------------------------------------- roifile = bold/dotprobe_all_hrf/lh_lingual/fmcsm8-007 roitxtfile = bold/dotprobe_all_hrf/lh_lingual/fmcsm8-007 .txt oldtxtstyle = 0 srcvol = bold/007 /fmcsm8 srcfmt = bvolume srcreg = bold/register.dat srcregold = 0 srcwarp unspecified label file = /mnt/users.q.shares/jar62.GDfLZ35tI9j9pkcF2UKe/Analysis/freesurfer/SAD_C22/l abel/lh.lingual.label labelreg unspecified label fill thresh = 1e-07 mskvol = bold/dotprobe_all_hrf//AllvFix/sig.nii mskfmt unspecified msk volume same as source msk tail = pos msk threshold = 0.000000 msk invert = 0 msk frame = 0 ERROR: could not find volume bold/007 /fmcsm8. Does it exist?