If you're doing anatomical analysis, then FSFAST is not needed (nor its directly structure). If you have an input anatomical volume in any format, then just run
recon-all -s yoursubjectname -all -i inputfile
inputfile can include img but be warned that img does not have information about head orientation. This may cause a catastrophic failure (eg, the head is upside down). If the head is left-right reversed, then it probably won't fail but everything will be left-right reversed. don't say I did not warn you:)
On 12/21/2015 05:37 PM, Luis Fernado Silva Castro de Araújo wrote:
Dear Douglas,
It's an anatomical analysis. Perhaps I misunderstood the requirement for setting up the directories in the FSFAST for the recon-all command.
If that is the case, it is then a matter of converting my img files into mgz and run recon-all on them, am I right?
Does the command recon-all also gives me volumes for specific Brodmann's areas? Or do I have to run a labeling to that?
Thank you,
luis
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