Hi everyone,
I am trying to use following command to save stats from a set of subjects in a table format:
aparcstats2table --qdec qdec.dat --hemi lh --meas thickness -t zzz.txt
But after I run this, I get following error:
Traceback (most recent call last):
File "/usr/local/freesurfer/bin/aparcstats2table", line 353, in <module>
subj_listoftuples = assemble_inputs(options)
File "/usr/local/freesurfer/bin/aparcstats2table", line 228, in assemble_inputs
fsid=row['fsid'].strip()
KeyError: 'fsid'
My qdec.dat file looks like below:
fsid HC003_1 HC004_1 HC006_1 HC015_1
This command works fine if I use subject IDs individually here e.g. aparcstats2table --subjects HC_Example HC003_1 HC004_1 HC006_1 HC015_1 --hemi lh --meas thickness -t zzz.txt
Another question I have here is: How can I average these thickness stats and display it on standard fsaverage?
Any help would be really appreciated.