Re: [Freesurfer] yet another newbie question (YANQ)

Check out this page http://surfer.nmr.mgh.harvard.edu/fswiki/CoordinateSystems

This might also be useful http://surfer.nmr.mgh.harvard.edu/fswiki/FsAnat-to-NativeAnat

On 07/30/2014 08:12 PM, Krieger, Donald N. wrote:

Thanks for the helpful responses to the previous questions, Bruce.

It’s great to not stay stuck for long.

Here’s another.

I am working with voxels in the original MRI coordinate system.

It appears that voxel and vertex coordinates in freesurfer are transformed to a 1 mm x 256^3 volume.

Is there a tool to transform these back to MRI coordinates, preferably command line?

Or is the transform itself easily found?

Thanks again.

Regards,

Don

Don Krieger, Ph.D.

Department of Neurological Surgery

Universityof Pittsburgh

(412)648-9654 Office

(412)521-4431 Cell/Text

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