You can try updating your version of freeview following the instructions at https://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview. The freeview version shipped with FS 6.0 uses some pretty old Qt libraries, so upgrading might fix this… hopefully Andrew
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of "Tarui, Tomo" TTarui@tuftsmedicalcenter.org Reply-To: FS Help freesurfer@nmr.mgh.harvard.edu Date: Thursday, January 23, 2020 at 3:15 PM To: FS Help freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] [EXT] Re: Freeview froze when trying to open volume file
External Email - Use Caution Thank you very much for your prompt advice. I have granted freeview the permission to access all files through System Preferences —> Security & Privacy —> Privacy (then restarted computer). Unfortunately, the freeview still freezes when attempting to open a new file. Following are additional lines of error messages. I would appreciate for your advice again.
[Tomo-no-iMac:~] tomotarui% freeview 2020-01-23 15:05:44.369 Freeview[876:10904] -_continuousScroll is deprecated for NSEventTypeScrollWheel. Please use -hasPreciseScrollingDeltas. 2020-01-23 15:05:44.369 Freeview[876:10904] -deviceDeltaX is deprecated for NSEventTypeScrollWheel. Please use -scrollingDeltaX. 2020-01-23 15:05:44.369 Freeview[876:10904] -deviceDeltaY is deprecated for NSEventTypeScrollWheel. Please use -scrollingDeltaX. 2020-01-23 15:05:44.369 Freeview[876:10904] -deviceDeltaZ is deprecated for NSEventTypeScrollWheel. Please use -scrollingDeltaX. 2020-01-23 15:05:50.197 Freeview[876:10904] modalSession has been exited prematurely - check for a reentrant call to endModalSession:
** I force closed freeview here **
020-01-23 15:11:19.499 Freeview[876:10904] WARNING: <NSOpenPanel: 0x7f9ad6455330> found it necessary to prepare implicitly; please prepare panels using NSSavePanel rather than NSApplication or NSWindow. 2020-01-23 15:11:19.518 Freeview[876:10904] WARNING: <NSOpenPanel: 0x7f9ad6455330> found it necessary to start implicitly; please start panels using NSSavePanel rather than NSApplication or NSWindow. 2020-01-23 15:11:19.518 Freeview[876:10904] WARNING: <NSOpenPanel: 0x7f9ad6455330> running implicitly; please run panels using NSSavePanel rather than NSApplication. 2020-01-23 15:11:19.519 Freeview[876:10904] -[NSApplication runModalSession:]: Use of freed session detected. Do not call runModalSession: after calling endModalSesion:. 2020-01-23 15:11:19.548 Freeview[876:10904] modalSession has been exited prematurely - check for a reentrant call to endModalSession:
Tomo
On Jan 23, 2020, at 14:21, Ruopeng Wang <rpwang@nmr.mgh.harvard.edumailto:rpwang@nmr.mgh.harvard.edu> wrote:
EXTERNAL MESSAGE - TREAT LINKS/FILES WITH CARE You probably need to grant freeview permission to access your files and folders if you have not. You can check in System Preferences. Ruopeng On 1/23/20 2:16 PM, Tarui, Tomo wrote: External Email - Use Caution Dear Freesurfer community,
I have been also experiencing problem that freeview froze when I tried to select and open a new volume file. This started after I upgraded mac OS X to Catalina. Until that I have been using freeview fine for five years.
Error message said
Last login: Thu Jan 23 13:43:03 on ttys000 [tup09900bj11:~] tomotarui% setenv FREESURFER_HOME /Applications/freesurfer [tup09900bj11:~] tomotarui% source $FREESURFER_HOME/SetUpFreeSurfer.csh -------- freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /Applications/freesurfer FSFAST_HOME /Applications/freesurfer/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /Applications/freesurfer/subjects MNI_DIR /Applications/freesurfer/mni FSL_DIR /usr/local/fsl [tup09900bj11:~] tomotarui% freeview 2020-01-23 13:54:35.305 Freeview[3205:65482] modalSession has been exited prematurely - check for a reentrant call to endModalSession:
I do have read permissions for those volume files when I checked with ls -l and mri_info. I have tried cleaned up and reinstall freesurfer, which did not solve the problem. It may be unique to my computer, but I would appreciate very much for any recommendation. Tomo
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Please consider the environment and the security of the information contained within or attached to this e-mail before printing or saving to an insecure location.