Hi Pascale, This is a weird one, particularly since it run the first part, apparently without errors. Can you please send us:
1. The recon and hippocampal log files. 2. The exact dev version, and information on your system (MAC/Linux, version, etc) Cheers, /E
Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Pascale Patenaude pascalepatenaude@hotmail.com Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Monday, March 23, 2020 at 16:55 To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Error in segmentation of the hippocampal subfields: /tmp/MCR_3634872073/.mcrCache8.4 error
External Email - Use Caution Hello FreeSurfer Developers,
I'm attempting to produce an automated segmentation of the hippocampal substructures and the nuclei of the amygdala (see hippocampal module https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiOfAmy...).
When I try to run the segmentHA_T1.sh SUBJECT_ID [SUBJECTS_DIR] command with the dev version of freesurfer, I keep getting this error:
[cid:image001.png@01D6013C.206E3F90]
I've tried setting the MCR_CACHE_ROOT env variable to somewhere under my user directory.
Does anyone have any suggestions on how this can be fixed?
Thank you in advance,
Pascale
