Hi Diane
you need to symlink the directories
$FREESURFER_HOME/subjects/lh.EC_average $FREESURFER_HOME/subjects/rh.EC_average $FREESURFER_HOME/subjects/V1_average $FREESURFER_HOME/subjects/fsaverage
in your SUBJECTS_DIR
cheers Bruce
On Fri, 1 Jun 2012, Diana Omigie wrote:
I am getting an error during the recon all step that I cannot figure out. It seems to occur in the stage where labels are being written as two label files are missing in the labels directory ( lh.entorhinal_exvivo.label and lh.entorhinal_exvivo.label ) and an error log message emerges in the labels directory which says:
MRISread(/neurospin/meg/meg_rep/anat/freesurfer_segmentation/lh.EC_average/ surf/lh.sphere.reg): could not open file
In the main directory,an rh.EC_average and lh.EC_average file appears with broken links...
Does anyone know what the problem might be be. Sorry for my ignorance. Many thanks, Diana Omigie