My sesspar file contains /data/freesurfer/Sessions
If i use -cwd it seems like it's just looking in the current directory as the session parent... But that's not the case. My working directory is /data/freesurfer/scratch/bert and the data is in /data/freesurfer/Sessions/bert-functional
I set it up that way because the fs-fast documentation said the study directory with your sessid and sesspar should be seperate from the session parent directory, and says that all the commands should be run from the study directory.
-Mike
At 10:53 AM 4/12/2005 -0400, Doug Greve wrote:
What is in your sesspar file? If you're running the command from /data/freesurfer/scratch/bert, then you can use -cwd instead of -df sesspar
doug
Mike Angstadt wrote:
Hi, I've just started to look at fs-fast for analyzing data and was
following
along with the tutorial data using the fs-fast documentation from the website. My problem arises when I try to view the data with tkmedit:
tkmedit-sess -sf sessid -df sesspar -a sem_assoc -c omnibus -map fsig
tkmedit-sess logfile is /data/freesurfer/scratch/bert/log/tkmedit-sess.log
INFO: Found session in: /data/freesurfer/Sessions//bert-functional INFO: Found session in: /data/freesurfer/Sessions//bert-functional ERROR: cannot find
/data/freesurfer/scratch/bert//data/freesurfer/Sessions//bert-functional/bold/register.dat
I don't understand why it's adding the current directory to the beginning of the path where it should be looking for the register.dat file. The path should just be /data/freesurfer/Sessions//bert-functional/bold/register.dat, where the registration file is located.
Any thoughts?
Also, as a side note... has the tutorial data been updated since the documentation was made? Because following alone with exactly the commands given in the documentation does not yield the same visual results for me as the example images.
-Mike
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-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422