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Hi Freesurfer developers,
I have executed the recon-all command using the T1 images but I would be interested in doing a reconstruction of the hippocampal subregions using for that purpose a higher resolution images (eg T2 or FLAIR) as input. I read here https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfields that is possible make hippocampal segmentation using the T2 images, but if T2 images cannot be used as input to execute the recon-all in consecuence I can´t do the segmentation of hippocampal subfields or on the contrary the recon-all and the hippocampal subfields segmentation are two operations that can be executed independently ?
I hope to have explained myself correctly
Thanks in advance.
Cheers
2018-05-03 18:28 GMT+02:00 Douglas N. Greve dgreve@mgh.harvard.edu:
No, not currently
On 05/03/2018 11:26 AM, M Janani wrote:
Hi Team,
I have one doubt. Can I input T2 weighted images forrecon-all command?
Regards,
Janani
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