Does it work on other subjects? I'm guessing this has to do with having the MNI tools properly installed. For testing purposes, can you download and run version 7 to see if it works?
On 12/8/2020 12:40 PM, Devanshi jain wrote:
External Email - Use Caution
Hello FreeSurfer Developers,
I'm attempting to convert my .nii files (taken from ADNI dataset) to subject files (like bert). For the same I'm following this website : MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://neuroimage.usc.edu/brainstorm/Tutorials/LabelFreeSurferhttps://secure-web.cisco.com/13_r_7kEeP_WS7SHxH0ECZXOxZuTEltmsSnlVNl81ZLfHEwNDB_11o3EFmEh8jBnC1DRib-gmQgxCzrNA2y7JAD-w_LU7bDv24QbcO5MeKe-gTkgaWnqJg26eUtDBwGTLk0S36S5lkRrXmCRiZB0Vo5JcvmWKq_fXgBxxGfdTbGXfKQG6TpTcO-fj934vAZik-fcyNAA495Ukja-dZgVLE2Acueds8sqLHs1zmUM1G3CIh9Bi3Y9Z1xozoa5FC1GnJHhYJKCLOw4GoZkdKRTaFQ/https%3A%2F%2Fneuroimage.usc.edu%2Fbrainstorm%2FTutorials%2FLabelFreeSurfer I'm getting an error while performing step 4 of 'Running Freesurfer' heading. Command that is giving error : recon-all -all -subjid <subject_id> Here my <subject_id> is subject_0295
Error on the terminal : recon-all -s subject_0295 exited with ERRORS at Tue Dec 8 18:25:40 IST 2020
The freesurfer/subjects/subject_0295/scripts/recon-all.log file didn't mention any specific error.
I've searched the list and no similar errors have been reported. Does anyone have any thoughts on how to trouble-shoot this one? Also, I have attached the recon-all.log in case it's of any use.
1) FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 2) Platform: Ubuntu 16.04.7 LTS 3) recon-all.log: see attached
-- Regards, Ms. Devanshi Jain
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer