6 Mar
2025
6 Mar
'25
11:51 p.m.
External Email - Use Caution
Dear FreeSurfer devs,
I have tried to use the hypothalamic segmentation tool on my T1w data (voxel size = 1mm), but in in some subjects, one of the volume measurements of the structures is equal to 0. I have used the following command:
mri_segment_hypothalamic_subunits --i /home/user1/data/scans/ --o /home/user1/data/segmentations/ --vol /home/user1/data/hypothalamic_volumes.csv
I am using FreeSurfer version 8.0.0. Am I forgetting any important flag in the command? Any help to solve this issue would be appreciated.
Thank you very much for your time. Best,
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*Miguel Ángel Rivas Fernández*