Hi Antonella,
I am trying to resample my DTI data in the CVS space and seems that after I ran the mri_cvs_register with the flag --noaseg and no argument for my target template (so the registration was done on the cvs template) I got the following error:
ERROR: cannot find or read /media/1Tra/Antonella_2011/DTI_FS/dtrecon_cvs/P01/cvs/combined_tocvs_avg35_elreg_afteraseg-norm.m3z
If your cvs registration proces finished without any errors, this file should be there. Could you let us know what other *m3z files you have or check whether the full registeration completed?
Can you please tell me why I am missing this file and how I can get it? Do I need to use another file from my outputs if I was running the cvs_mri_register with the flag --noaseg?
This is what I was running:
mri_cvs_register--mov P01 --noaseg
After registration I got 4 files:
combined_tocvs_avg35_elreg_norm.m3z
combined_tocvs_avg35_elreg_norm_aseg.mgz
el_reg_tocvs_avg35.mgz
nlalign-norm.m3z
nlalign-norm.mgz
Ah, as you ued the --noaseg option you can use combined_tocvs_avg35_elreg_norm.m3z instead of combined_tocvs_avg35_elreg_afteraseg-norm.m3z for your purposes.
Is the nlalign-norm.mgz the final result of my CVS and contains contributions from ALL registration steps?
It is the resampled final product of the cvs registration, but this is not a morph file.
Also is the CVS atlas included in the file called: cvs_avg35?
Yes, it is.
--Lilla kk