10 Dec
2016
10 Dec
'16
5:23 p.m.
Hi Anand
you will need write permissions to a dir, after which you can just run:
recon-all \ -i <path to a single dicom file in the right series> \ -s <subject id> \ -sd <dir for all your subjects> \ -all
No need to convert to nifti or anything cheers Bruce
On Sat, 10 Dec 2016, anand iyer wrote:
I wonder if anybody could help please?
- I have converted DICOM to NIFTI and then when I try to apply mri_convert
command to change it to .mgz; i cant locate the converted file!
- When I try and create directories of the patient within subjects
subfolder; it says ‘permission denied’. I then used the sudo command to prepare directories.But then i cant move .mgz file (which is not found) into the mri subfolder of the patient.
- Thus i cannot apply the command recon-all.
Is there any easy way to get the DICOM to load on to freesurfer without all this hassle?
I am grateful for your help.
Anand