When you first run the recon, it stores the full path of the talairach file in the mgh file, then tries to read that path. If you move the recons, then the path will be wrong. But it eventually finds the right one.
Chacko Cherian wrote:
Hello all, I also noticed that the program searches for the talairach transform in the wrong directory??could someone tell me why..
THanks
Chacko.
#@# processing subject 8/25 subj13... Reading /ud/chacko/freesurfer/subjects/AD_norm_cor25all111/AD_norm_group_analysis/subj13/surf/rh.sphere.reg Talairach transform /ud/chacko/freesurfer/subjects/AD_norm_cor25all111/maketemp/AD/subj13/mri/transforms/talairach.xfm does not exist ... Loading tal xfm file /ud/chacko/freesurfer/subjects/AD_norm_cor25all111/AD_norm_group_analysis/subj13/mri/transforms/talairach.xfm Read /ud/chacko/freesurfer/subjects/AD_norm_cor25all111/AD_norm_group_analysis/subj13/mri/T1.mgz Surface area: 802.9 cm^2 Applying linear transform Talairach transform /ud/chacko/freesurfer/subjects/AD_norm_cor25all111/maketemp/AD/subj13/mri/transforms/talairach.xfm does not exist ... Loading tal xfm file /ud/chacko/freesurfer/subjects/AD_norm_cor25all111/AD_norm_group_analysis/subj13/mri/transforms/talairach.xfm
--- Chacko Cherian chacko_cherian@yahoo.com wrote:
Hello all,
Here's an error that i got while running group analysis on a couple of subjects...i checked the rh.orig file and the rh.sphere.reg and i could open both using tksurfer.
Reading
/ud/chacko/freesurfer/subjects/AD_norm_cor25all111/AD_norm_group_analysis/subj1/surf/rh.sphere.reg
mrisReadTriangleFile(/ud/chacko/freesurfer/subjects/AD_norm_cor25all111/AD_norm_group_analysis/subj1/surf/rh.orig):
surface doesn't match
/ud/chacko/freesurfer/subjects/AD_norm_cor25all111/AD_norm_group_analysis/subj1/surf/rh.sphere.reg
No such file or directory mrisReadTriangleFile failed.
No such file or directory MRISreadOriginalProperties: could not read surface file orig No such file or directory mris_make_average_surface: could not read orig file for rh.
No such file or directory
Thanks in advance
Chacko.
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